PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J262V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 379aa    MW: 41805.6 Da    PI: 8.1122
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J262VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.91.3e-23192239148
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                  +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr
  Araip.J262V 192 RCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSR 239
                  6**********************************************9 PP
2SBP44.15.4e-142843134978
                  EEETTT--SS--S-STTTT-------S--- CS
          SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  fh lsefD++krsCr+rLa+hn+rrrk+q+
  Araip.J262V 284 FHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 313
                  9**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-25186239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.119190311IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-22191240IPR004333Transcription factor, SBP-box
PfamPF031101.0E-16193239IPR004333Transcription factor, SBP-box
PfamPF031101.4E-7284310IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-10284313IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLDYEWGNPS IMLTGNEDGA APPPSDQTHR QIFDHYASHA LLPDHFLHGP GATTAASNNA  60
HNPTTTIDLS HHHFSPQQTH HHVPHSFFDP RAFHAASSTH YPPPHPQPPP PPSMLSLDPL  120
PHHAHCGPGH GLMLVPKSED VGRPMDFVGS RIGLNLGGRT YFSSSEDDFV SRLYRRSRPA  180
EPGSTASSNS PRCQAEGCNA DLSQAKHYHR RHKVCEFHSK ASTVIAAGLT QRFCQQCSRC  240
LGEVGMEKTE VPLGEVLIMI EVTVHGEIPR AFASPNMFVV RLWFHLLSEF DNGKRSCRKR  300
LADHNRRRRK TQQPPAQDIH KSQPATNLDN VARSPPESGA QSSSSVTVAV SPPDYFRQRP  360
YQTGSPSTTS SSLFFSSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-24183310184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J262V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122290.0KF312229.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182762.10.0squamosa promoter-binding-like protein 8
RefseqXP_025632049.10.0squamosa promoter-binding-like protein 8 isoform X1
RefseqXP_025632051.10.0squamosa promoter-binding-like protein 8 isoform X1
TrEMBLA0A445ADH60.0A0A445ADH6_ARAHY; Uncharacterized protein
STRINGXP_007134545.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-66squamosa promoter binding protein-like 8