PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J6KI9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 224aa    MW: 25765.7 Da    PI: 6.4396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J6KI9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
      Araip.J6KI9 14 RGPWSPEEDTKLKEYIDKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-23565IPR009057Homeodomain-like
PROSITE profilePS5129420.971966IPR017930Myb domain
SMARTSM007172.8E-121364IPR001005SANT/Myb domain
PfamPF002496.5E-161462IPR001005SANT/Myb domain
SuperFamilySSF466893.79E-191588IPR009057Homeodomain-like
CDDcd001671.01E-81662No hitNo description
Gene3DG3DSA:1.10.10.606.2E-66687IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTKLKEYID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANAGSSL PFYQNQQQEQ QQALMSPMQQ YYPMFGSEGS  120
CSSSDGSCSH GGREIKKEEM GFHHHHHMFH HHEEQQQQAM VVDHDGINNN NQWTEKLDKW  180
LFQTANPLDY DLEVIKQLVI SNDGLFSVDE NKTVQESKPI IYSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J6KI9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945875e-78BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167959.17e-99homeobox protein 10-like
TrEMBLA0A2U1LS737e-58A0A2U1LS73_ARTAN; Homeodomain-like protein
TrEMBLA0A444Y7M49e-58A0A444Y7M4_ARAHY; Uncharacterized protein
TrEMBLA0A445BW291e-57A0A445BW29_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-53myb domain protein 36