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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.J9C6R | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 131aa MW: 14936.6 Da PI: 10.4487 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37.6 | 7.3e-12 | 27 | 103 | 1 | 81 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81
kfY++Y+k + Fs++++++++ ++i+++ vC+keg+ +++ + + +t+++t +C a++ v+ +k g w ++++
Araip.J9C6R 27 KFYKHYSKLADFSTKIRNTTRD--GDKIKNQLIVCTKEGRWKSKISP---TLKTNPSTGLNCPARIYVHIMKdVGLWTISRI 103
6****************98776..8889************9998776...999*****************9989*****987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.6E-8 | 27 | 103 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 131 aa Download sequence Send to blast |
MQTRCVVDEK FVPKVGMIFK TLEEVGKFYK HYSKLADFST KIRNTTRDGD KIKNQLIVCT 60 KEGRWKSKIS PTLKTNPSTG LNCPARIYVH IMKDVGLWTI SRIGQRCSNN TRSLACLCIA 120 PSKPTRKLEL D |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.J9C6R |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016206076.1 | 1e-59 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_029145717.1 | 4e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A444YMN6 | 2e-68 | A0A444YMN6_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF21 | 14 | 477 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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