PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JF9VV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 420aa    MW: 47644.8 Da    PI: 8.0265
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JF9VVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.JF9VV  51 KFYKNYAKATGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGSWIISKVVLDHSHPCCP 137
                  6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1651137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.174277313IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-4279310IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4288315IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDDSTSDCQL NPGEVDYEFE SNKVSEPLSV VDDQFVPKVG MTFTTLEDAG KFYKNYAKAT  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
SWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGIRPSKT YQSFVAAAGG  180
HRDLLIQFVK QYDNCLGSRE QAERESDAAD FHTVIPCATK SSIEAQFQDV YTHQKFREVQ  240
VQFIGKANCI TRLTNSALGY SVYEVGEQVF SSIFNKFVVT YDSVAAEVKC QCLLFESRGI  300
LCRHALSVLS FERVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLLEPRS KRFDQLVFRS  360
QNICEFASES EELTAILHRA YDNVMAEMES LKAKRKGSSS LSHEDANLES VNELQSPPRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JF9VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960283.11e-162protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_020986710.11e-163protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444X7830.0A0A444X783_ARAHY; Uncharacterized protein
TrEMBLA0A444ZDI50.0A0A444ZDI5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-22far-red elongated hypocotyls 3