PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JIB5P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 396aa    MW: 44761.3 Da    PI: 8.3477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JIB5PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12226271555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k++q
  Araip.JIB5P 226 HIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQMQ 271
                  999***********************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16224283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-17226284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-11226275No hitNo description
SMARTSM003534.4E-14227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKISMLVGED QHKKSTKQQR GGGAMKVLIC QHERILGRVN YLMEISSELG IMEDPNSFLW  60
HLSSIDTCAT TLAVFGDSLQ KNNPLFCNSN LMNSKISMME TTTSPTATII ERPAKQLRSN  120
NTSNWSSHIN KTPESHFVGS CSNNILSFVD NTNHHHHQLG LVMKPKVEIM NSSSPNNIDT  180
QGTTLLGNNN NNHHNHENYL FKESSCHEAK NFGQRPKLSS HQPHDHIIAE RKRREKLSQR  240
FIALSALVPG LKKMDKASVL GDAIKYLKQM QEKVSALEEE QKKKKTVESV VMVKKSQLCN  300
DDEDSCSSET EPLPEIEARF CERNVLVRVH CEKKKGVIEN TIIEIEKLHL KVINSSVLTF  360
GTFALDITII AQMDMEFSMT VKELVKNLRL AFSTFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14218285168Transcription factor MYC2
5gnj_B3e-14218285168Transcription factor MYC2
5gnj_E3e-14218285168Transcription factor MYC2
5gnj_F3e-14218285168Transcription factor MYC2
5gnj_G3e-14218285168Transcription factor MYC2
5gnj_I3e-14218285168Transcription factor MYC2
5gnj_M3e-14218285168Transcription factor MYC2
5gnj_N3e-14218285168Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234ERKRRE
2230235RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JIB5P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182236.10.0transcription factor bHLH25 isoform X1
TrEMBLA0A444WXT40.0A0A444WXT4_ARAHY; Uncharacterized protein
STRINGGLYMA13G32650.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-60bHLH family protein