PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.JJ5F2

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YA

Protein Properties

Length: 215aa MW: 23672.1 Da PI: 6.7968

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.JJ5F2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.4	1.7e-31	120	176	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh hAl+R+Rg+gGrF Araip.JJ5F2 120 EEPVFVNAKQYHGILRRRQSRAKAESEHKA-IRNRKPYLHESRHLHALKRARGCGGRF 176 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.5E-35	118	179	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.959	119	179	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.4E-27	121	176	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-23	122	144	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	124	144	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.5E-23	153	176	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVEDNEADGK QQSESEMQSS SANGTSDPDT GSQNVQFEKP AQLGDVLAMA IAIGHHPMSL 60 ASLAPPGYPY PDPYYRSIFA PYDTQAYAPQ PYGYGGQPMV HFQLMGIQQA GVPLPSDAFE 120 EPVFVNAKQY HGILRRRQSR AKAESEHKAI RNRKPYLHES RHLHALKRAR GCGGRFLNAK 180 ENENGHNDAA STDKSQCNIN PNSDKSDITS SDRTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	119	186	1	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.JJ5F2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016189889.1	1e-124	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016189890.1	1e-124	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_025638053.1	1e-124	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_029147541.1	1e-124	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	1e-60	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A444ZXH9	1e-158	A0A444ZXH9_ARAHY; Uncharacterized protein
STRING	XP_007159545.1	2e-89	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-53	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]