PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JQQ8M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 947aa    MW: 105151 Da    PI: 6.3225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JQQ8MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-183884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+e de+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
      Araip.JQQ8M 38 KGNWTPEQDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84
                     79*****************************9.************986 PP
2Myb_DNA-binding63.15.5e-2090136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l
      Araip.JQQ8M  90 KGPWSKEEDEVIIELVNKYGPKKWSTIAHHLP-GRIGKQCRERWHNHL 136
                      79******************************.*************97 PP
3Myb_DNA-binding48.81.6e-15142184145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++++k++w+
      Araip.JQQ8M 142 KEAWTQEEELTLIRAHQIYGNK-WAELTKFLP-GRTDNSIKNHWH 184
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7193384IPR017930Myb domain
SuperFamilySSF466895.24E-153691IPR009057Homeodomain-like
SMARTSM007173.9E-153786IPR001005SANT/Myb domain
PfamPF002495.5E-153884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-213996IPR009057Homeodomain-like
CDDcd001673.11E-134084No hitNo description
PROSITE profilePS5129433.43385140IPR017930Myb domain
SuperFamilySSF466891.27E-3187183IPR009057Homeodomain-like
SMARTSM007173.7E-1989138IPR001005SANT/Myb domain
PfamPF002492.6E-1890136IPR001005SANT/Myb domain
CDDcd001675.93E-1792136No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2797144IPR009057Homeodomain-like
PROSITE profilePS5129419.641141191IPR017930Myb domain
SMARTSM007171.5E-14141189IPR001005SANT/Myb domain
PfamPF002499.1E-14142184IPR001005SANT/Myb domain
CDDcd001672.81E-11144184No hitNo description
Gene3DG3DSA:1.10.10.602.5E-21145191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MNGDRKIPVS PSKEQIDGAQ KIRALHGRTT GPTRRSTKGN WTPEQDEILR KAVQHFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEV IIELVNKYGP KKWSTIAHHL  120
PGRIGKQCRE RWHNHLNPGI NKEAWTQEEE LTLIRAHQIY GNKWAELTKF LPGRTDNSIK  180
NHWHSSVKKK LDSYLASGLL AQFQSAPLAG NPDQQMVLTS EMHSVGDGNG PKRTDREDVS  240
ECSQESADSA GLTSNVDLQT REVYKPEEES ILGKDHNLSQ ASCPQHYYIS LDDVDICIPE  300
VACQDACCSQ FAEQICSHKS GNALTGDYQF NCVDNSEMCN MVNVPFQTEG LGISTLMRPA  360
SMDPAKPNNM SISEDECCRF LFSEAVSDGC FSPRVYIKDM DMVDFSGCNM FLCQSCHIQI  420
PSPRESSSTS QLTCPKCSNN FKGSSSSQSF PPVFSANSEV KQEQPETPKD SSKLVPVNSF  480
GYGSNSKVTC YAKYGKLNEH SKKEDTGTLC YQPPCFPSLD IPFLSCDLAQ SEPDMQQEFS  540
PLGIRQLLMS PVTCLTPFRL WDSPSGGDNL DALFKSAAKT FTGTPSILSK RHRDLLSPLS  600
DKRTDKKLVT DMPSSLIKSF SSLDFMFDDN ENREADMISP TSLQKWSIAV SVDDDKENCG  660
QTVKDKQVEE KNNSAISDEK NRENGTVKNS SQDSLKHQVE QPSGILVERN MNDIAPNSPG  720
SDTVLGSSAR TPKNLSNRRL EAIPNQRSPC SRVKCVRAKE HEKLSVDVTC VGTTSGKQAK  780
NDGGFETSSI FGDTPFMKSI KSPSAWKSPW FINATFLCSP RIATEISIED YGYLMSSGNR  840
SYDAIGLMKQ ISEKTAATYA NAQEVLENET PEALPKNASL NDEEGGQDDN HLQKQSAKHS  900
QAASNALMER RILDFSECET TPSKGDNSKS SPVNFSSPSS YLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-67381916159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-67381916159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JQQ8M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-34AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207096.10.0transcription factor MYB3R-1
TrEMBLA0A445CVN90.0A0A445CVN9_ARAHY; Uncharacterized protein
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4