PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JYS4T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 200aa    MW: 23195 Da    PI: 4.6953
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JYS4TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.5e-21103194191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+  rt+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Araip.JYS4T 103 QFYNAYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDmDDRSREARSLMRTKCPARLRVKLDYgCGRWKVSCFVESHNHDLTP 194
                  6****************99998.8888***************9998867888999******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-20103194IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MWLRCVGLGK GHLPPTPTVH FLSVEAQPLV VIKEDDVKNN SDNDLGDDFD YQPNAEDDAD  60
DDDVDSLDST SKSEEVCGVK RIADLMMEDI WNLEFRTEDE ACQFYNAYSC WHGFVMRKDD  120
VVRDNQGRII SRQLVCNKEG WRNMRYLDMD DRSREARSLM RTKCPARLRV KLDYGCGRWK  180
VSCFVESHNH DLTPPQFAHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JYS4T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979553.11e-117protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025652828.11e-120protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D4J31e-111A0A445D4J3_ARAHY; Uncharacterized protein
TrEMBLA0A445D7E11e-113A0A445D7E1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1-related sequence 5