PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K100J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 454aa    MW: 50198.8 Da    PI: 6.1966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K100JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.7e-10110132426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C f+++tG Ck+G +CkF+H+
  Araip.K100J 110 EDCAFYLKTGNCKFGFNCKFNHP 132
                  89********************9 PP
2zf-CCCH29.41.4e-09160180525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C++++r+G Ck+G  CkF+H
  Araip.K100J 160 ECKYYLRSGGCKFGKACKFNH 180
                  8******************** PP
3zf-CCCH38.71.6e-12205227426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++++rtG Ck+G++CkF+H+
  Araip.K100J 205 KQCPYYMRTGSCKFGANCKFNHP 227
                  67********************9 PP
4zf-CCCH29.51.3e-09340366127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f++tG Ck+ ++CkF+H++
  Araip.K100J 340 PGEPECSYFLKTGDCKFKSNCKFHHPK 366
                  5799*********************96 PP
5zf-CCCH35.32e-11388411326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +  C++++r+G+Ck+G+ CkF H+
  Araip.K100J 388 QNVCSHYSRYGICKFGPACKFDHP 411
                  568********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.211106134IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6107135IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7110132IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704155183IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7160180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5160183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4161182IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563201229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6202228IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10204227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5206226IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061339367IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7341366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5344368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6383411IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5385412IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014385413IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9388411IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEPSESESVG SSTTTTTKDP QLGSQNEPSS PFPNHHHDPQ QSEPDLSENL GLQDETRDEL  60
GAEFHKKLDL KDEDERVAEN EKKDSDFVAG SGEYGGEEVQ QQYPLRPDAE DCAFYLKTGN  120
CKFGFNCKFN HPLGRRKSQA VKEKVGGERE EPAEKSGQIE CKYYLRSGGC KFGKACKFNH  180
TRGKPSAAPL LELNFLGLPI RLGEKQCPYY MRTGSCKFGA NCKFNHPDPT SGGRVGDSVS  240
GFGNGNYVPL QGASQPPSGP SWSSSKTLND TTPFVPMMLS PSQAVSPRSP EWNGYQAPVY  300
LSERGMHQPP AYVMNNPTIE TPMYMHQPKQ TPIEEFPERP GEPECSYFLK TGDCKFKSNC  360
KFHHPKNRVA RIPPCNLSDK GLPLRPDQNV CSHYSRYGIC KFGPACKFDH PVINPSPPSS  420
PGLDQQTSYA DTPNEMTTME GNGDANDEAI RQPV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K100J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954506.10.0zinc finger CCCH domain-containing protein 43 isoform X1
RefseqXP_025688562.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-132C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445DWR00.0A0A445DWR0_ARAHY; Uncharacterized protein
STRINGGLYMA17G13580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-130C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]