PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K44DW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 143aa    MW: 16261.2 Da    PI: 5.9827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K44DWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-072875247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      rWTt   +l+ +a + +  +   +W +Ia  +g g  + ++k r+ ++
      Araip.K44DW 28 SRWTTKQNKLFENALAIYDEEttdRWYKIAMFVG-GTNEVEVKRRYEML 75
                     59*****************99*************.***********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-42678IPR001005SANT/Myb domain
SuperFamilySSF466897.41E-112883IPR009057Homeodomain-like
CDDcd001672.48E-52976No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
RITSSFPISY SLLAFVAMAS NTLSSPNSRW TTKQNKLFEN ALAIYDEETT DRWYKIAMFV  60
GGTNEVEVKR RYEMLLEDIK DIESGKVPLP AYKRNAGCSR VNISNAEQSI RDQVTSTKAE  120
EFETELKNGL ISEELHNVSR SRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-21301121189RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K44DW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964020.14e-64protein RADIALIS-like 3
RefseqXP_016182643.14e-64protein RADIALIS-like 3
RefseqXP_025653226.14e-64protein RADIALIS-like 3
RefseqXP_025698856.14e-64protein RADIALIS-like 3
TrEMBLA0A444Z9Q21e-62A0A444Z9Q2_ARAHY; Uncharacterized protein
STRINGGLYMA01G38250.25e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-28RAD-like 1