PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K558L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28919.3 Da    PI: 8.2214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K558LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-293989151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+ nr+vtfskRrng+lKKA+ELSvLCda+v viifs++g+l+e+ss
  Araip.K558L 39 KRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSS 89
                 79***********************************************96 PP
2K-box48.15e-171372111791
        K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                  l++ ++ L  +   L +  R++lG +L+s s+ e+qq+e++L++sl+ iR +K++l++eqie+lq k  e  +++
  Araip.K558L 137 LSRRVSFLSPKFGLLLECVRKMLGHCLSSSSFDEIQQMEDKLHTSLQCIRVRKTQLFKEQIEQLQSKCMEKPSKH 211
                  555566666677778899************************************************988766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.0113191IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-383190IPR002100Transcription factor, MADS-box
CDDcd002659.34E-3833106No hitNo description
SuperFamilySSF554558.5E-3133111IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003387IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283353IPR002100Transcription factor, MADS-box
PfamPF003194.3E-254087IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-285368IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-286889IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.054118229IPR002487Transcription factor, K-box
PfamPF014861.3E-14136205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MCLWLKINRN KFPTTVEESP QSKLERIWIE MVRGKTEMKR IENECNRKVT FSKRRNGLLK  60
KAHELSVLCD AQVGVIIFSQ KGTLFEFSST SSHISKILER YQEYTGEFPH NKLREDYIQK  120
LKFDSASMEE KIEILELSRR VSFLSPKFGL LLECVRKMLG HCLSSSSFDE IQQMEDKLHT  180
SLQCIRVRKT QLFKEQIEQL QSKCMEKPSK HREEEATETT HHTLEVETDL FIGLPKQCAD  240
HNQIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1831122189MEF2 CHIMERA
6byy_B8e-1831122189MEF2 CHIMERA
6byy_C8e-1831122189MEF2 CHIMERA
6byy_D8e-1831122189MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K558L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966914.11e-162MADS-box protein AGL42-like isoform X1
TrEMBLA0A444XW101e-136A0A444XW10_ARAHY; Uncharacterized protein
STRINGGLYMA20G29300.15e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-50AGAMOUS-like 20