PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K6QMW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 138aa    MW: 15722.9 Da    PI: 8.0408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K6QMWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.21.3e-1358138185
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                  kfY++YAk + Fs+r+++++++   ++i+++  +Cske k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H
  Araip.K6QMW  58 KFYRNYAKAADFSTRVRSTNRK--GNKIKNQLITCSKEEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDH 138
                  6****************98887..777999********999998776...8999**************998879***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1058138IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MFFVIYIIDD SSSDCQLNQG EVDYEFESNK VSEPLFVVDD QFVPKVGMTF TTLEDAGKFY  60
RNYAKAADFS TRVRSTNRKG NKIKNQLITC SKEEKWKSKI SPTEKTNPTA GLNCPARIYI  120
HTLKDVGAWI ISKVVLDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K6QMW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-138HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.12e-81protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y6C32e-84A0A444Y6C3_ARAHY; Uncharacterized protein
TrEMBLA0A444YPX92e-85A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBLA0A444YSY65e-84A0A444YSY6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-08FAR1-related sequence 6