PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K6Y07
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21127.9 Da    PI: 10.7524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K6Y07genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.3e-091531802350
                  HHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  23 KAeELSvLCdaevaviifsstgklyeys 50 
                  K +EL +L daev ++ifsst klyey+
  Araip.K6Y07 153 KTKELAILYDAEVGLVIFSSTTKLYEYA 180
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004041.1E-5145160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.989147183IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-7152183IPR002100Transcription factor, MADS-box
PfamPF003192.5E-7153179IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-5160181IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
DVVQTPSLPP TKIPHPPNFP HSLRTGQAFF PAQPRTLLPS LVVQNPVAGH QLRSPLSVVV  60
LLQPVKLGIS FALPTIRHWR PLGLPGACLG ASNPSPFVSS LWKPQSSPQI CKLPASRVWC  120
TKPSKLFVSA LTHSIEYSKC LVKKLLRNMG KNKTKELAIL YDAEVGLVIF SSTTKLYEYA  180
NTRIIFLDWK T
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.K6Y07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2336122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-08AGAMOUS-like 21