PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.KA2YS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 145aa MW: 16798.5 Da PI: 10.158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.KA2YS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	52	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk+vGF ++++ k + +++ +C++egkr+++ + ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ Araip.KA2YS 52 QFYQNYAKRVGFVTKIRVGKDK----VPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 134 6************9986655....66788999*****9877...999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-16	52	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MESVLEEQNI EIFGSRSHGY ALYSKAFLFF TLRMHDVPKV GMCFGTIEDA NQFYQNYAKR 60 VGFVTKIRVG KDKVPKNQMI TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW 120 IISKVCLDHS HPCDPEMAKL LTRNR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.KA2YS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015970806.1	5e-80	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_025703827.1	4e-79	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445ETK8	4e-75	A0A445ETK8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-14	FAR1 family protein