PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KD5HD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 187aa    MW: 21260.5 Da    PI: 7.8817
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KD5HDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.2e-081061392154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Araip.KD5HD 106 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 139
                  469*****************************87 PP
2ELK30.76.8e-116081122
          ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                 ELKh+L+++Y+ +++++++E++
  Araip.KD5HD 60 ELKHELKQGYKDKIVDIREEIL 81
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011885.1E-46081IPR005539ELK domain
PROSITE profilePS512139.9696080IPR005539ELK domain
PfamPF037894.9E-66081IPR005539ELK domain
PROSITE profilePS5007111.72680143IPR001356Homeobox domain
SMARTSM003894.7E-1182147IPR001356Homeobox domain
SuperFamilySSF466891.11E-1682145IPR009057Homeodomain-like
CDDcd000864.32E-1283144No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2587144IPR009057Homeodomain-like
PfamPF059203.5E-18100139IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTGVSPGEGT GATMSDDEDD QVDSDANLFD GGLDGSDSMG FGPLVPTENE RSLMERVRHE  60
LKHELKQGYK DKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ  120
ETGLQLKQIN NWFINQRKRN WHSNPSTSTS LKSKRKRYSN NHNIYMILLS SLNNNNKTNN  180
AGDNSAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-1383147872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136156RKRNWHSNPSTSTSLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KD5HD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280601e-148EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945370.11e-112homeobox protein knotted-1-like 3
RefseqXP_025623574.11e-112homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-98KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A445B4Y41e-110A0A445B4Y4_ARAHY; Uncharacterized protein
STRINGXP_007136985.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.16e-87KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]