PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KHB2Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 327aa    MW: 37417.5 Da    PI: 5.9707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KHB2ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
      Araip.KHB2Z 29 RGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding51.81.8e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++++G++ W++Ia++++ gRt++++k++w++
      Araip.KHB2Z  82 RGNITLEEQLLILELHTRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8492480IPR017930Myb domain
SuperFamilySSF466891.57E-3026123IPR009057Homeodomain-like
SMARTSM007177.4E-152878IPR001005SANT/Myb domain
PfamPF002492.1E-162976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-223083IPR009057Homeodomain-like
CDDcd001673.23E-113176No hitNo description
PROSITE profilePS5129418.09981131IPR017930Myb domain
SMARTSM007179.1E-1481129IPR001005SANT/Myb domain
PfamPF002492.0E-1482125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2284130IPR009057Homeodomain-like
CDDcd001676.23E-7102125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEVKGSSNSN NSAVLISHSE EEEMMDLRRG PWTVDEDLTL INYIATHGEG RWNSLARSAG  60
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHTRW GNRWSKIAQY LPGRTDNEIK  120
NYWRTRVQKH AKQLKCDVNS KQFKDAMRYL WMPRLVERIQ AAAAASTTTT TVVAPTNTSI  180
NNNNNNAYTY NNNNLNNNFE VHNGKMMLTT TPPPSVMANN DFVGSQITTQ SYNTPENSST  240
AASSDSFGTP ISDFNDYYNS NNINNLGDNN FYQASQTLFS HEQGMDLQSM MMVESNTPWM  300
QSGDTSDNFW NVENMLFLEQ QLMNDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252612324120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KHB2Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177884.10.0transcription factor MYB108-like
RefseqXP_025630250.10.0transcription factor MYB108
TrEMBLA0A445AW920.0A0A445AW92_ARAHY; Uncharacterized protein
STRINGGLYMA17G04171.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-86myb domain protein 78