PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KK7TK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 519aa    MW: 56189.2 Da    PI: 4.7403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KK7TKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15.2e-1022074691277
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++Ll+cAeav++++l+la+al++++  la +++ +m+++a+yf++ALa+r+++        + p+e+ +++ s++l++   f+e +P+lkf+h+ta
  Araip.KK7TK 207 LVHTLLACAEAVQQENLKLADALVKHVGLLAQSQAGAMKKVASYFAQALARRIYQ--------IYPQEAMDSSFSDVLHM--HFYESCPYLKFAHFTA 294
                  689***************************************************9........55677766667777776..5*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+++++rvH+iDf+++qG+QWpaLlqaL+ Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+dl++e+L++
  Araip.KK7TK 295 NQAILEAFASATRVHVIDFGLKQGMQWPALLQALTLRPGGPPTFRLTGIGPPQTDNTDSLQQVGWKLAQLAQTIGVQFEFRGFVCSSLSDLDTEMLEI 392
                  ************************************************************************************************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                  +pgEa+aVn+v++lhr+l++s+s+e+    vL +vk+++Pk+++vveqea+hn++ F++rf+eal+yys+lfdsle ++++
  Araip.KK7TK 393 RPGEAVAVNSVFELHRMLARSGSIEK----VLGTVKKIKPKIFTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSVAA 469
                  **************************....**********************************************99875 PP
2GRAS213.6e-07486509351374
         GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                  vee++g+l+lgW++r+L+++SaW+
  Araip.KK7TK 486 VEENNGCLMLGWHTRSLIATSAWK 509
                  799********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.4E-3754127No hitNo description
PfamPF120414.4E-3654121IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098555.769181519IPR005202Transcription factor GRAS
PfamPF035141.8E-99207469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKRDHSEAGS SYGQQGSSSS SVAKGECSSM SSGKAKMWEE DHDPSSGGGG GGMDELLAAL  60
GYKVRNSDMA DVAQKLEQLE MVMGTAQEDG ISHLATDTVH YDPTDLYSWV QSMINELNPP  120
PTTAAANGTS SSLLCSSQIE ENTSRAFTDD SEYDLRAIPG IAVYPQNDEP SNKRLKTNPV  180
PEIGSEGVQE PSRPVVLVDS QETGVRLVHT LLACAEAVQQ ENLKLADALV KHVGLLAQSQ  240
AGAMKKVASY FAQALARRIY QIYPQEAMDS SFSDVLHMHF YESCPYLKFA HFTANQAILE  300
AFASATRVHV IDFGLKQGMQ WPALLQALTL RPGGPPTFRL TGIGPPQTDN TDSLQQVGWK  360
LAQLAQTIGV QFEFRGFVCS SLSDLDTEML EIRPGEAVAV NSVFELHRML ARSGSIEKVL  420
GTVKKIKPKI FTVVEQEANH NGPVFVDRFT EALHYYSSLF DSLEGSVAAG LAAPPPTEDL  480
LMSELVEENN GCLMLGWHTR SLIATSAWKL PPLSSGGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5121446626280Protein SCARECROW
5b3h_A6e-5121446625279Protein SCARECROW
5b3h_D6e-5121446625279Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KK7TK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975220.10.0LOW QUALITY PROTEIN: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A444ZVZ00.0A0A444ZVZ0_ARAHY; Uncharacterized protein
STRINGXP_007163387.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2