PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KL6XP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 490aa    MW: 56181.7 Da    PI: 6.4413
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KL6XPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.24.1e-16521222391
         FAR1  23 krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Araip.KL6XP  52 DNQGRIISRQLVCNKEGWRNMRYLDlDDRSREARSLTRTKCPARLRVKLDYgCGRWKVSCFVESHNHDLTP 122
                  67899****************99887889999*******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-1452122IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.718211247IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5222249IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.102.5E-4290296IPR001878Zinc finger, CCHC-type
SuperFamilySSF577562.09E-7325357IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.5E-4334354IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.746339354IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSINEDDAKN DSDNDLGDDF DYQPNAEDDA EDEDVDSLDS TSKSEEDDVV RDNQGRIISR  60
QLVCNKEGWR NMRYLDLDDR SREARSLTRT KCPARLRVKL DYGCGRWKVS CFVESHNHDL  120
TPPQFAHLVP ANRRLTVTDK NTLIDFMHNL DRALKEYRNN ELIADFKSQC SEPVMITSLE  180
RARALNIKVL STTLDKVEFS VTAFGDPAKD RWVEVDRGKN LFSCSCKLFE SRGIPCSHVF  240
CAMKFENILE FPDSLIYKRW TKNAKNEFIS TQMPVNDDVE RVLKFRVGAL ASNCNKLCDI  300
ACKDVAYFDE VQSELVNLII RLQSRKQGNS TPNVNKRACS NCHKYGHYYK RCPELMQHSV  360
EGNPRDRSDD NASARDSGFS PERFANSSRP FSVKSENHSG PKTKPFKKAE TRKFTVTGMR  420
NRKGKDNTFV ERNLNESSES IDIASMNGFF NKNLYSLTQV KESQEDKGHS FTNYECVNDV  480
MDEKCDTPHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KL6XP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192007.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025638221.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BN500.0A0A445BN50_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5