PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.KR4TE

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 170aa MW: 18783.7 Da PI: 9.1234

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.KR4TE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	8e-42	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael++++ Araip.KR4TE 39 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVR 136 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Araip.KR4TE 137 SE 138 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.747	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-42	39	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MPECPEKGKK IKREGDNVSS QMGRRHMLGP AGTLNTITPC AACKLLRRRC AQECPFSPYF 60 SPHEPQKFAS VHKVFGASNV SKMLMEVPEC QRADAANSLV YEANVRLRDP VYGCMGAIST 120 LQHQVQSLQA ELNAVRSEIL KYKLREANNN IIIPSSHHHL PMLPSSGAVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	39	146	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	39	146	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.KR4TE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179225.1	1e-119	LOB domain-containing protein 15
Refseq	XP_025684516.1	1e-119	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A444X553	1e-117	A0A444X553_ARAHY; Uncharacterized protein
STRING	GLYMA04G39830.2	1e-101	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-80	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]