PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KSF49
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 360aa    MW: 40675.9 Da    PI: 8.3361
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KSF49genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.91.4e-1251128182
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                  kfY++YAk + Fs+r+++++++   +ei+++  +Cskegk +++ +    +++t+++   +C a++ ++  k  g w ++k++
  Araip.KSF49  51 KFYRNYAKAACFSTRVRSTNRK--GNEIKNKLITCSKEGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVV 128
                  6****************98887..888**************998877...8999**************998879*****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-951128IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDDLTSDCQL NQGEVDYEFE SNEVSEPLSV IDDQFVPKVG MTFTTLEDAE KFYRNYAKAA  60
CFSTRVRSTN RKGNEIKNKL ITCSKEGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVWI IHTLAVQFRE VQAQFRGKEN CITRLTNSAL GYSVYEVGEQ VSSSIFNKFV  180
VTYDSVAAEI YTGTMEQEGK EATHTHIKSS YDEPLLEPRS KRFDQLVFRS QNICEFASES  240
EELAVILHRT YDNVMAEMES LKAKRKGTSS LSHEDTNLES FYELQSPPRI RTRGRPKNRL  300
GSKLDKQIAN ATKKKKTKGL SEIKLFDAAS VVHSNSSQYQ GHVMNYQFRV PAAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KSF49
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-164HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-124protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020989760.11e-124protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444XQ790.0A0A444XQ79_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-06FAR1 family protein