PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KWZ1G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 172aa    MW: 19838.9 Da    PI: 11.4942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KWZ1GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.6e-1124601148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      l  +v++   + W+ Ia+ +g gR +kqc++rw+++l
      Araip.KWZ1G 24 TLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 60
                     688999999999**********.*************97 PP
2Myb_DNA-binding45.61.6e-14115160248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g WT++ d  l  +v++   + W+ Ia+ +g gR +kqc++rw+++l
      Araip.KWZ1G 115 GQWTPDQDMTLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 160
                      79*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0471564IPR017930Myb domain
SuperFamilySSF466898.97E-132268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-162265IPR009057Homeodomain-like
SMARTSM007177.5E-42262IPR001005SANT/Myb domain
CDDcd001673.01E-92260No hitNo description
PfamPF002492.7E-92360IPR001005SANT/Myb domain
PROSITE profilePS5129421.927109164IPR017930Myb domain
SuperFamilySSF466892.08E-16111167IPR009057Homeodomain-like
SMARTSM007172.9E-12113162IPR001005SANT/Myb domain
PfamPF002492.8E-13115160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20115168IPR009057Homeodomain-like
CDDcd001673.41E-12117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MLMRLPLATT FMVNGHRIRT CDMTLEALVN ENKLKKWSQI AKLLGGRNGK QCRERWHNHL  60
QPNLKLYFVI FYGAPLLVTE KDPRANANAR PRRRNHIRSQ RANANAPPTG NHIHGQWTPD  120
QDMTLEALVN ENKLKKWSQI AKLLGGRNGK QCRERWHNHL QPNLKKNSSA SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-151916811112MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-151916811112MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KWZ1G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020959242.12e-61transcription factor MYB118-like
RefseqXP_025650997.12e-61transcription factor MYB118-like
TrEMBLA0A444YZ434e-60A0A444YZ43_ARAHY; Uncharacterized protein
STRINGGLYMA05G08761.11e-17(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-19myb domain protein 118