PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.KY3RW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 435aa MW: 50062.3 Da PI: 9.5995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.KY3RW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.1	5.9e-23	81	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y++ GF +r ++ k+ +gei+++tfvC+++g+r+++ + +++r++++ tr+gC a++++kk++ +gkw v++++ +Hn +l Araip.KY3RW 81 EFYTSYSRLKGFAIRSKRVKNA--KGEIVSYTFVCNRQGFRHKKWLDkLDRKREHKPITRCGCVAEMRIKKNHsNGKWFVSQFVDDHNRTLL 170 6************9998877..999**********99976646899999**************9************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-21	81	170	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	238	274	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-4	249	276	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.1E-4	250	270	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MNNINHTPIS TSTNHESTMP DPEDGLLNEE TLFDMSILGD EPGFPNMTQT DIEPQAAQVP 60 SHVSVEDVLK MEFFTPREAR EFYTSYSRLK GFAIRSKRVK NAKGEIVSYT FVCNRQGFRH 120 KKWLDKLDRK REHKPITRCG CVAEMRIKKN HSNGKWFVSQ FVDDHNRTLL SERFIGYLPS 180 HRNMSDVEIA QMNSMREVGI SIPKIYQSFA MQVGGFNLVR FTKQDMHKEK YRRPESTWEV 240 LHQPQNGTFQ CNCRRMESYG IPCVHIIVVL VGNDISSLLE TLVLKRWCKN AKNHVTSVRQ 300 VTKTGDAASR YRSRLGAFLD QCKHFAKLAC LRDEDYKVFS EKMARDAIML EVKNGLRVAP 360 DVNPHLNGEG VVGYMIRPAS GQKAPAEETF LRYQRAQRRE NAAPARNWVI AELVAPVRLY 420 FQANSFLGTL YLQNF

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MNNINHTPIS TSTNHESTMP DPEDGLLNEE TLFDMSILGD EPGFPNMTQT DIEPQAAQVP  60
SHVSVEDVLK MEFFTPREAR EFYTSYSRLK GFAIRSKRVK NAKGEIVSYT FVCNRQGFRH  120
KKWLDKLDRK REHKPITRCG CVAEMRIKKN HSNGKWFVSQ FVDDHNRTLL SERFIGYLPS  180
HRNMSDVEIA QMNSMREVGI SIPKIYQSFA MQVGGFNLVR FTKQDMHKEK YRRPESTWEV  240
LHQPQNGTFQ CNCRRMESYG IPCVHIIVVL VGNDISSLLE TLVLKRWCKN AKNHVTSVRQ  300
VTKTGDAASR YRSRLGAFLD QCKHFAKLAC LRDEDYKVFS EKMARDAIML EVKNGLRVAP  360
DVNPHLNGEG VVGYMIRPAS GQKAPAEETF LRYQRAQRRE NAAPARNWVI AELVAPVRLY  420
FQANSFLGTL YLQNF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.KY3RW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025688919.1	1e-145	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A444X0Y9	1e-154	A0A444X0Y9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9185	2	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-19	FAR1-related sequence 5