PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.L0BQU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 158aa MW: 18120.2 Da PI: 10.0731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.L0BQU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.7e-15	27	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y+k + Fs++++++++ ++i+++ vCs+eg+ +++ + + +t+++ +C a++ v+ +k g w + k++l+H+H+++ Araip.L0BQU 27 KFYKHYSKFADFSTKIRNTTQD--GDKIKNQLIVCSREGRWKSKISP---TLKTNPSVGLNCPARIYVHIMKdVGLWTIFKVVLNHSHPCC 112 6*************987766..8889********9998777...999**************999************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-11	27	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MQTSRVVDEK FIPKVGMIFK TLEEAGKFYK HYSKFADFST KIRNTTQDGD KIKNQLIVCS 60 REGRWKSKIS PTLKTNPSVG LNCPARIYVH IMKDVGLWTI FKVVLNHSHP CCADQAEMLK 120 QHMELSMFVR LTIKTHEEVG IRPSKTLPII CGNSWQPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.L0BQU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029145717.1	2e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YMN6	3e-86	A0A444YMN6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-09	FAR1 family protein