PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L0W9L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 258aa    MW: 29912.7 Da    PI: 7.8862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L0W9LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-091452147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+ Ed++l d++k +G g W+  +++ g        ++rw++y
      Araip.L0W9L 14 KGAWTAMEDKILTDYIKIHGEGKWRHLPKRAG--------QLRWLNY 52
                     79****************************99........5666666 PP
2Myb_DNA-binding51.72e-1659102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
      Araip.L0W9L  59 RGNITHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 102
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.69948IPR017877Myb-like domain
SuperFamilySSF466892.66E-2212100IPR009057Homeodomain-like
SMARTSM007174.7E-61355IPR001005SANT/Myb domain
PfamPF002491.2E-51451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-131560IPR009057Homeodomain-like
PROSITE profilePS5129424.04154108IPR017930Myb domain
SMARTSM007176.4E-1558106IPR001005SANT/Myb domain
PfamPF002491.3E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2361108IPR009057Homeodomain-like
CDDcd001672.62E-1063104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTAM EDKILTDYIK IHGEGKWRHL PKRAGQLRWL NYLRPGIKRG  60
NITHDEEELI IRLHNLLGNR WSLIAGRLPG RTDNEIKNYW NTNIGRKLQN GTQNCSSSNL  120
LQLDPNPNPK TREWPCPNNY LQNNIGSCLV QTKATRWPNN NKVILTKEII TKQNNEGMVH  180
NHHINNNGNN LYSELLKMDF AEASSCLENN MLEGIGQLYP KLSFNDTHFH WPWSDSLYDT  240
DFDFQHMENI IESGFDWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21121085108B-MYB
1h8a_C6e-211210825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L0W9L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-41AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616600.11e-124transcription factor MYB3-like
TrEMBLA0A444XHA41e-122A0A444XHA4_ARAHY; Uncharacterized protein
TrEMBLA0A445BMN21e-121A0A445BMN2_ARAHY; Uncharacterized protein
STRINGXP_007135450.14e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-54myb domain protein 7