PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L71IU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 369aa    MW: 42234.9 Da    PI: 6.442
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L71IUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.5e-2164157189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  ++YneY++   Fsvr+sk  ++     +gei+++ fvCs+eg+r+ ++ + ++++  +r+ tr+gC+a++kv+ ++ +g+w v+++  +HnH++
  Araip.L71IU  64 DYYNEYGRIKEFSVRRSKVGRRtkqGAEGEIIWQIFVCSREGERDGKHMQqEDRKMDPRPITRCGCEARIKVHVDNaSGRWFVEQFCDNHNHPM 157
                  69**************98766643367899**************99988834566679*****************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1864158IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.061304351IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSGETVPVEE AEAMDSSAGD ADIDAEAVVR IVNGIGSFGA IEFSSLTAND VLTTEFTSLQ  60
VAHDYYNEYG RIKEFSVRRS KVGRRTKQGA EGEIIWQIFV CSREGERDGK HMQQEDRKMD  120
PRPITRCGCE ARIKVHVDNA SGRWFVEQFC DNHNHPMLDA RFRGLSQSHR VVKEGDLHQI  180
NSMRKSGLRV PTIFRAFANQ SGGFETVGTE DDIELGKFIH NGYNLREFVE HFQHYLEFMR  240
RRELVADYKS AYGEPAVKTK LEAIEQFAAT VYTKEVFELF WEVLILASNV RVVSTKRTSA  300
CVLFEVTMYC KQRSWAVSWA EEDVEFSCSC QRMESFGLPY VHMVGVLVYL NMTAIPRSLI  360
LERWTKRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L71IU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192260.11e-147protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025639519.11e-147protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0R91e-152A0A444X0R9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-16FAR1-related sequence 5