PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L7DK0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 442aa    MW: 48771.4 Da    PI: 9.8795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L7DK0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-173883148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
      Araip.L7DK0 38 RGKFSKEEEEAILKLHAVLGNR-WSAIAARLP-GRTDNEIKNFWHTHL 83
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333132IPR017877Myb-like domain
SuperFamilySSF466891.21E-211991IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-111943IPR009057Homeodomain-like
PROSITE profilePS5129427.5093387IPR017930Myb domain
SMARTSM007172.0E-173785IPR001005SANT/Myb domain
PfamPF002498.5E-163883IPR001005SANT/Myb domain
CDDcd001671.02E-124083No hitNo description
Gene3DG3DSA:1.10.10.603.2E-234487IPR009057Homeodomain-like
SuperFamilySSF465659.16E-5168268IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1107.9E-4222271IPR001623DnaJ domain
PfamPF118333.2E-11243351IPR021788Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006631Biological Processfatty acid metabolic process
GO:0031969Cellular Componentchloroplast membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
NRTNAKGISN NVYLLGLLRC GKSCRLRWIN YLRPDIKRGK FSKEEEEAIL KLHAVLGNRW  60
SAIAARLPGR TDNEIKNFWH THLKKRIEKS EVHNNGINSS KYSSCSSQII TMPRVVPAIA  120
PSSGSGSAAS SFNDGLSSTS RNRSSSSPNI IAGPGFCSAI TSSSDDTSGE TMGNHNDGSI  180
QLSEEMEFWF HNTWSTRAKL FCSAASAAGA GSSSSNPDGD FNPYEVLGVS PIERFDMIKA  240
AYAKKKKEAE INGDEATASR LEKAYDKLMM AQLTNRKKGV TFGSFKVSKD IKYADKQPIL  300
PWGPRFAKST TNDTRINLAI SAVFTAWILV RRSAEYKPLQ FLAFAFVYRL FEKLKSFESP  360
ATRTYNEEGE DTGEGLRMGK RLLRSLALVF GCVAVSSVGY TIFLNIIEYA GGFIPAALYN  420
SQELVITTSS AVMLYILATY YR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20198840109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L7DK0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086560.0KF208656.1 Arachis hypogaea putative R2R3 MYB protein 2 (MYB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205366.10.0uncharacterized protein LOC107645775
RefseqXP_025662769.10.0uncharacterized protein LOC112758335
TrEMBLA0A1J7HWH00.0A0A1J7HWH0_LUPAN; Uncharacterized protein
STRINGXP_007147214.11e-146(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-41myb domain protein 15