PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LDU0G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17581.4 Da    PI: 10.0805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LDU0GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-125091344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i++   r+ tf kRr+g+lKK e L +L d+++++ ifs+ +
  Araip.LDU0G 50 IDDMNSRKATFRKRRAGLLKKLEQLAILYDIQACIAIFSPGD 91
                 889999*********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-164099IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.974092IPR002100Transcription factor, MADS-box
CDDcd002662.50E-2241123No hitNo description
PRINTSPR004044.0E-74262IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-1942131IPR002100Transcription factor, MADS-box
PfamPF003192.9E-145092IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-76277IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDNNCRPNLF SVLRKRRVSF AELARQYEMA ANNNDDDIPK MKRRMKLQLI DDMNSRKATF  60
RKRRAGLLKK LEQLAILYDI QACIAIFSPG DKNPTVWPSV EEAKEIVEKF EEIPEPERSG  120
RMVTHQEYRQ QKVIWMEKQL EKLKKLND
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14163KRRMKLQLIDDMNSRKATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LDU0G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178848.11e-106agamous-like MADS-box protein AGL92
RefseqXP_025685654.11e-106agamous-like MADS-box protein AGL92
TrEMBLA0A444Z9H82e-87A0A444Z9H8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15602811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.12e-21AGAMOUS-like 92