PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LJJ47
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 309aa    MW: 34672.9 Da    PI: 5.4492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LJJ47genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1980128355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Araip.LJJ47  80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 128
                  9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3279137IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2279137IPR016177DNA-binding domain
PROSITE profilePS5103223.77579136IPR001471AP2/ERF domain
SMARTSM003803.1E-3879142IPR001471AP2/ERF domain
PRINTSPR003678.0E-128091IPR001471AP2/ERF domain
PfamPF008476.3E-1280128IPR001471AP2/ERF domain
CDDcd000181.31E-3280137No hitNo description
PRINTSPR003678.0E-12102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MCGGAIIAEF IPRNRTRRLT ASEIWPNTFS NNQVDDFDFD FSHHHLKNTP TLNKSSSPSV  60
GEQDQENSKP PAKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD  120
REARKIRGKK AKVNFPNEDD EYSIQQSRNI IPNIPPPIRR SSNHPPLYQY GDANNNSNNN  180
MNNQARTLNL NLEFGYDLNH GGAVGVGDAI NADPFVSCVD QNSEYGSGSG SASEVAGGSS  240
GDQQHQEEKK SYEVEKLSEE LMAYENYMGF YDQMPFYDAQ SAVAAVAAAN NNNNVVQESV  300
VGELWTFDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2280136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21801381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LJJ47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0489310.0JQ048931.1 Arachis hypogaea ethylene-responsive element binding factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205223.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_020959545.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_020959546.10.0ethylene-responsive transcription factor RAP2-3
RefseqXP_025660800.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLA0A444YIM40.0A0A444YIM4_ARAHY; Uncharacterized protein
STRINGGLYMA02G01960.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-35ethylene-responsive element binding protein