PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LQ8SS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 1032aa    MW: 114212 Da    PI: 8.397
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LQ8SSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82e-40118195178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqv++C++dls+ak+yhrrhkvCe hska+++ + +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  Araip.LQ8SS 118 MCQVDNCKEDLSSAKDYHRRHKVCELHSKASKAPLGNQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 195
                  6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-34113180IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.641116193IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-37117197IPR004333Transcription factor, SBP-box
PfamPF031105.7E-30119192IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.205.3E-5819915IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.02E-6820916IPR020683Ankyrin repeat-containing domain
CDDcd002041.32E-4824916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MEKVAPPIFM HQALQSRFCD VPMTTTATTK KRDLSYDVDK SSSNGNWNPN AWSWDSVRFI  60
GKPVPQQNGV VSVEEETLRL NLGSSGVSGS GGSVDPSVSR PSKRVRSGSP TGTASYPMCQ  120
VDNCKEDLSS AKDYHRRHKV CELHSKASKA PLGNQMQRFC QQCSRFHPLT EFDEGKRSCR  180
RRLAGHNRRR RKTQPEDVTS QPESVATGNA EIFNLLSAIA SSQGQKPNGK FEDRSKIASQ  240
VPDKDQLVQI LNRIPLPADL AAKLLNVGGK GQIQTSSYHH DKVNQSNSGP LTKDLLAVLS  300
TTLSASTPNS QKSSQSSDSE KSRASADQVG ESLQMRQYPQ EFASVGDERS SGSSQSPVED  360
SDFPEVRVNL PLQLFSSSPE VGNPPKLTPS QKYFSSDSSN PVEERSPSSS PAVDNQFDLQ  420
GVARGLKADG VPSRREVNAN KEASQSQSYN ISLNLFNAPN SRVQPSSLQS VPFQAGYASS  480
GSDHSPPSLN SDAQDRTGRI MFKLFDKDPS HFPGTLRTQI YNWLSNSPSD MESYIRPGCV  540
VLSLYASMSS AAWEQLEENF LQHVHSLIQS NSDFWRIGRF LVHSGNQLAL HKDGKIHLCK  600
PWRTWRSPEL ISVSPLAIVS GQETSFSLKG RNLSNPGTKI HCTGTGGYTP IKVVESACYG  660
MTYDKIKLSG IKVQDASPGL LGRCFIEVEN GFKGSSFPVI IADATICKEL RPLESEFDKE  720
ENASDAISDE HGYDLGRPRS REETLHFLNE LGWLFQRKRF SYTDLVPDYS LDRFRFILTF  780
SVERNCCMLV KTLLDMLVQK YLEGQWSSTA SLEMLNAIQL LNRAVKRKYV NMVDLLIQYA  840
VPSNNDASRK YVFPPNVAGP DGITPLHLAA CTSSSEGVID SLTNDPQEIG LNSWDSLLDA  900
NGQTPHAYAM MRNNHSYNVL VARKLSNRRR GHVSVTINSE IEHSSMDIEL KQRQSDQTKR  960
GQNSCTKCSA MADVRYSSRI PGSRSFGHHR PFIHSILAIA AVCVCVCLFL RGHPWVGSVT  1020
PFNWEKLDYG TI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31110192284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LQ8SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122330.0KF312233.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180086.10.0squamosa promoter-binding-like protein 14 isoform X1
RefseqXP_025682262.10.0squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A444XAR90.0A0A444XAR9_ARAHY; Uncharacterized protein
STRINGGLYMA20G00900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96943139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]