PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.LR314

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 809aa MW: 87642 Da PI: 6.0623

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.LR314	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	409.4	3.3e-125	442	797	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp + s +++++a+++f+ +sP++kfsh+taN Araip.LR314 442 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPIVPHS----QKVASAFQVFNGISPFVKFSHFTAN 535 579*************************************************************996....89999**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fA++lg+pfef va+++ ++++e+L+v+ Araip.LR314 536 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFG-VAEKVGNVDPERLNVS 628 **********************************************....***********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + Ea+aV++ h+l+d ++s ++ +L+l+++l Pkv++vveq+++ n++sFl rf+ea++yysalfdsl +++++eseer++vE++ll+rei+ Araip.LR314 629 KAEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVITVVEQDLS-NTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIR 719 ******9..999999999999....***************97.699**************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r+ + + +++Wre+l+++GF+ ++l +aa+qa+lll +++s+gy++ e++g l lgWkd L+++SaWr Araip.LR314 720 NVLAVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 797 *****998887.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.419	415	777	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-122	442	797	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048366	Biological Process	leaf development
GO:0090610	Biological Process	bundle sheath cell fate specification
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MAACALFSGA SNNTAEDGNV STTTTTTNGA AVAGSGSSPL TSASSNISAG EEQQHMLLLH 60 GSSGFMNQPH CERKLVRKRM ASEMELHPSI TNTTTTTISE YPRFPRRTTN NINTSSFIQK 120 GSSVGTGSNC NYPYNNNNNN NNINNNNNSN SISNVVVSRD NVTIPNYPIV TLTTNYSTMM 180 LPSLSSSSSS SSSSSSTNLI NTVNSSSPSI PSTTITVSAP NYAQHFNQEI LLDNNQNTTS 240 PAVVTSSPSS MDESSAASNW IDGILKDLIH SSNSVSIPQL INNVREIIYP CNPNLAMLLE 300 YRLRLLTSDS SASAVPAAPP PPPPPQNKTP VMKQTNTSNM HAYSTMHFQD SSLNQYWPVV 360 PPTPLDSNNN NSVSLANTLP SPPPPPPPPQ PPQQEKPEED LVTAPATTTS TATATEMAVL 420 TRKKTEEMNQ QKKKDEEGLH LLTLLLQCAE AVSAENLEDA NKMLLEISQL STPFGTSAQR 480 VAAYFSEAIS ARLVSSCLGI YATLPIVPHS QKVASAFQVF NGISPFVKFS HFTANQAIQE 540 AFEREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMEAL EATGKRLSDF 600 ANKLGLPFEF FGVAEKVGNV DPERLNVSKA EAVAVHWLQH SLYDVTGSDT NTLWLLQRLA 660 PKVITVVEQD LSNTGSFLGR FVEAIHYYSA LFDSLGSSYG EESEERHVVE QQLLSREIRN 720 VLAVGGPSRT GEPKFHNWRE KLQQCGFRGI SLAGNAATQA SLLLGMFPSE GYTLVEDNGI 780 LKLGWKDLCL LTASAWRPPY TTAMAHHHS

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MAACALFSGA SNNTAEDGNV STTTTTTNGA AVAGSGSSPL TSASSNISAG EEQQHMLLLH  60
GSSGFMNQPH CERKLVRKRM ASEMELHPSI TNTTTTTISE YPRFPRRTTN NINTSSFIQK  120
GSSVGTGSNC NYPYNNNNNN NNINNNNNSN SISNVVVSRD NVTIPNYPIV TLTTNYSTMM  180
LPSLSSSSSS SSSSSSTNLI NTVNSSSPSI PSTTITVSAP NYAQHFNQEI LLDNNQNTTS  240
PAVVTSSPSS MDESSAASNW IDGILKDLIH SSNSVSIPQL INNVREIIYP CNPNLAMLLE  300
YRLRLLTSDS SASAVPAAPP PPPPPQNKTP VMKQTNTSNM HAYSTMHFQD SSLNQYWPVV  360
PPTPLDSNNN NSVSLANTLP SPPPPPPPPQ PPQQEKPEED LVTAPATTTS TATATEMAVL  420
TRKKTEEMNQ QKKKDEEGLH LLTLLLQCAE AVSAENLEDA NKMLLEISQL STPFGTSAQR  480
VAAYFSEAIS ARLVSSCLGI YATLPIVPHS QKVASAFQVF NGISPFVKFS HFTANQAIQE  540
AFEREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMEAL EATGKRLSDF  600
ANKLGLPFEF FGVAEKVGNV DPERLNVSKA EAVAVHWLQH SLYDVTGSDT NTLWLLQRLA  660
PKVITVVEQD LSNTGSFLGR FVEAIHYYSA LFDSLGSSYG EESEERHVVE QQLLSREIRN  720
VLAVGGPSRT GEPKFHNWRE KLQQCGFRGI SLAGNAATQA SLLLGMFPSE GYTLVEDNGI  780
LKLGWKDLCL LTASAWRPPY TTAMAHHHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	424	798	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.LR314

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016198844.1	0.0	protein SCARECROW
Swissprot	Q9AVK4	0.0	SCR_PEA; Protein SCARECROW
TrEMBL	A0A444ZLB4	0.0	A0A444ZLB4_ARAHY; Uncharacterized protein
STRING	GLYMA09G40620.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein