PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LRV99
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1763aa    MW: 194137 Da    PI: 5.6164
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LRV99genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22128228299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+++a+         + ++ +   l+++d++g +We+++iyr++++r+++t+GW++Fv+++++ +gD+vvF+  ++s +++
  Araip.LRV99 128 AKILTRSDANNGGGFSVPRSCADLVfpplnfeEDPPVQ--NLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSHGRM 221
                  599*******************777*****96556556..6************************************************..779999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  Araip.LRV99 222 FVGLRRN 228
                  ***9986 PP
2B369.45e-22649749299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+++a+         + ++ +   l+++d++g +We+++i+r++++r+++t+GW++Fv+++++ +gD+vvF+  ++s++++
  Araip.LRV99 649 AKILTRSDANNGGGFSVPRSCADLVfpplnfeEDPPVQ--NLRITDLHGAVWEFRHIHRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSDGRM 742
                  599*******************777*****96556556..6************************************************..7799*** PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  Araip.LRV99 743 FVGLRRN 749
                  ****986 PP
3B368.58.9e-2213231423299
                   EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3    2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90  
                    k+lt+sd+++ g +++p+++a+         + ++ +   l+++d++g +We+++i+r++++r+++t+GW++Fv+++++ +gD+vvF+  ++s +
  Araip.LRV99 1323 AKILTRSDANNGGGFSVPRSCADLVfpplnfeEDPPVQ--NLRITDLHGAVWEFRHIHRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSHG 1414
                   599*******************777*****96556556..6************************************************..77999 PP

                   ..EEEEE-S CS
           B3   91 elvvkvfrk 99  
                   +++v+++r+
  Araip.LRV99 1415 RMFVGLRRN 1423
                   9****9986 PP
4Auxin_resp71.52.5e-24264349183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+P++++ eFvvk+ekv + ++ +++svGmR+km  e+ dss+  + +Gtv++v+   +   W++S+Wr L+
  Araip.LRV99 264 AMELAAQNKPFEVVYYPSVGWGEFVVKAEKVDAMINgIPWSVGMRVKMGRENYDSSRMDWfQGTVSAVNVPgKDQPWSGSPWRTLQ 349
                  678899******************************9*******************************97424568********97 PP
5Auxin_resp72.51.2e-24778863183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+P++++ eFvvk+e+v + ++ +++svGmR+km  e+ dss+  + +Gtv+gv+   +   W++S+Wr+L+
  Araip.LRV99 778 AMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDAMINgIPWSVGMRVKMGRENYDSSRMDWfQGTVSGVTVPgKDQPWSGSPWRMLQ 863
                  678899******************************9*******************************97425568********97 PP
6Auxin_resp72.51.2e-2414811566183
   Auxin_resp    1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83  
                   a++ a+++++FevvY+P++++ eFvvk+e+v + ++ +++svGmR+km  e+ dss+  + +Gtv+gv+   +   W++S+Wr+L+
  Araip.LRV99 1481 AMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDAMINgIPWSVGMRVKMGRENYDSSRMDWfQGTVSGVTVPgKDQPWSGSPWRMLQ 1566
                   678899******************************9*******************************97425568********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-26124231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-17126227No hitNo description
Gene3DG3DSA:2.40.330.103.4E-29126231IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-17127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435127229IPR003340B3 DNA binding domain
PfamPF023621.4E-19128228IPR003340B3 DNA binding domain
PfamPF065073.3E-21264349IPR010525Auxin response factor
SuperFamilySSF1019361.29E-24644754IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-29644750IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-17647748No hitNo description
SMARTSM010196.0E-17648750IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464648750IPR003340B3 DNA binding domain
PfamPF023621.9E-19649749IPR003340B3 DNA binding domain
PfamPF065071.5E-21778863IPR010525Auxin response factor
SuperFamilySSF1019369.16E-2513181428IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2813181424IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-1713211422No hitNo description
SMARTSM010191.1E-1613221424IPR003340B3 DNA binding domain
PROSITE profilePS5086312.29413221424IPR003340B3 DNA binding domain
PfamPF023624.2E-1913231423IPR003340B3 DNA binding domain
PfamPF065071.5E-2114811566IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1763 aa     Download sequence    Send to blast
MPRRSAPSSS LPPRPTPIPA KFWRACAGIS AQAPVVNSRV YYFPQGHIDQ AASQPQNLSP  60
LVYSRPVIPC RVAAVNYFAD PNTDEVFLKI LLLPVTNGSA QDFLPPAVAA EGNSGNGNGD  120
DEEVISYAKI LTRSDANNGG GFSVPRSCAD LVFPPLNFEE DPPVQNLRIT DLHGAVWEFR  180
HIYRGTPRRH LFTSGWSKFV NSKKIISGDT VVFMKDSHGR MFVGLRRNMS LEDGISDGGL  240
DWVAAMGFAR NEKGRVTSTS VAEAMELAAQ NKPFEVVYYP SVGWGEFVVK AEKVDAMING  300
IPWSVGMRVK MGRENYDSSR MDWFQGTVSA VNVPGKDQPW SGSPWRTLQI TWDESEILKN  360
VNPVSPWQVE LLSETLLLPQ IFFPTKRFRT TDGSGVFTNE MGESSSSVTR FSIPDSTMGL  420
LNQTLLSNYD TLFSASMQGA RPHLFSATTY PFIPMDPSLS IDNSFENNIV PKLNVMLPKL  480
NIDTHKPKNL SPHSKSSLTP IDETPNSNST KSGATSFQLF AMPRRSAPSS SLPPRPTPIP  540
AKFWRACAGI SAQAPVVNSR VYYFPQGHID QAASQPRNLS PLVYSRPVIP CRVSAVNYFA  600
DPNTDEVFLK ILLLPVTDGS AQDFLPPAVA AEGNSGNGNG DDEEVASYAK ILTRSDANNG  660
GGFSVPRSCA DLVFPPLNFE EDPPVQNLRI TDLHGAVWEF RHIHRGTPRR HLFTSGWSKF  720
VNSKKIISGD TVVFMKDSDG RMFVGLRRNM SLDDDISDGG LDWCEAIGRV TSTSVAEAME  780
LAAQNKPFEV VYYPSVGWGE FVVKAEDVDA MINGIPWSVG MRVKMGRENY DSSRMDWFQG  840
TVSGVTVPGK DQPWSGSPWR MLQVELLSET LLLPQIFLPT KRFRTTDGSG VFINEMGESS  900
SSISRFSIPD STMGLLNQTL LSNYDTLFSA SMQGARHPLF SAATYPLFPI DPSLSIDSSF  960
ENNIVPKLNV MLPKLNIDTH KPKNLSPHSK SSLTPIDETP NTNSTKSGAT SFQLFGCTIQ  1020
TDQASDKIDD HNNNINPVSP WQVELLSETL LLPQVFFPTK RFRTSDGSGV FTNEMGESSS  1080
SITRFFIPDS TMGLLNQTLL SNYDTLFSAS MQGARHPLFS AATYPLFPID PSLSIDSSFE  1140
NNIVPKLNVM LPKLNIDTHK PKNLSPHSKS NLTPVDEIPN SNSTKSGATS FQLFAMPRRS  1200
APSSSLPPRP TPIPAKFWRA CAGISAQAPV VNSRVYYFPQ GHIDQAASQP RNLSPRVYSR  1260
PVIPCRVAAV NYFADPNTDE VFLKILLLPV TDGSAQDFLP PAVAAEGNSG NGNGDDEEVA  1320
SYAKILTRSD ANNGGGFSVP RSCADLVFPP LNFEEDPPVQ NLRITDLHGA VWEFRHIHRG  1380
TPRRHLFTSG WSKFVNSKKI ISGDTVVFMK DSHGRMFVGL RRNMSLDDDI SDGGLDWCEA  1440
IVGMDEGKEE KEEKEEEEEV MTEGFARNGK GRVSSTSVAE AMELAAQNKP FEVVYYPSVG  1500
WGEFVVKAED VDAMINGIPW SVGMRVKMGR ENYDSSRMDW FQGTVSGVTV PGKDQPWSGS  1560
PWRMLQITWD ESEILKNVNS VSPWQVELLS ETFLLPQMFP PTKRFRTTDG SGVFTNEMGE  1620
SSSSISRFSI PDSTMGLLNQ TLLSNYDTLF SPSMQGARHP LFSAVTHPLF SIDPSLSIDS  1680
SFENNIVPKL NVMLPKLNID THKPKNLSPQ SKFSSTPIDE TPNSNSTKSG ASSFQLFGCT  1740
IQTDKVSDKI DDHNNVEGED NIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-5818158751388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LRV99
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165233.10.0auxin response factor 17-like
RefseqXP_025665255.10.0auxin response factor 17-like
TrEMBLA0A445C9Z60.0A0A445C9Z6_ARAHY; Auxin response factor
STRINGXP_004515659.11e-154(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-116auxin response factor 17