PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LT9MF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 463aa    MW: 51554.1 Da    PI: 6.4476
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LT9MFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.32.8e-86504472373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela.alkl..fsevsPilkfshl 96 
                  ++lLl+cA a++s+d +laq++++ l++ asp+gd++qRl++ f++AL +r +r +++     + + +s +n +++l+ +++l  ++++ P+++f++ 
  Araip.LT9MF  50 EKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTAL---SFKGSS-NNIQRRLMtVTELagYVDLIPWHRFGFC 143
                  689***************************************************555544...344443.444444440444478************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......... 181
                  + N+ I +a+ g +rvHi+Df+i++++QWp++++aLa+ pegppslRiT+ +   ++    + +++e+g rLa+fA+  +vpfefnv+          
  Araip.LT9MF 144 ASNNEIFKAILGFQRVHILDFSITHCMQWPTFIDALAKSPEGPPSLRITVPSFRPPVpplVNVSTHEVGLRLANFAKFRDVPFEFNVIgnnlgpllap 241
                  *************************************************9888666678999************************************ PP

         GRAS 182 .............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                               v++ l+ l+++ L+++ +Eal++n++  l +l d++   +     rd++L+l+k+l+P++vv+v++++d++s+s+  r++ ++++
  Araip.LT9MF 242 nnselsnestsfhVESLLSLLNPSVLNLRDDEALVINCQNWLRYLSDDRKGNHRclsLRDAFLSLIKGLNPQIVVLVDEDCDLSSPSLTSRIATCFNH 339
                  ****99999999666688999************************9998777666669**************************************** PP

         GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                   +  fd+le+ lp++s +r+  E   +g++i+n++  eg +r+er e+ ++  +r+++aG+ ++p+ +++++++k ll +++  g+ ++ e+g lvl+
  Araip.LT9MF 340 LWIPFDALETFLPKDSCQRTEFESD-IGQKIENIIGYEGHHRIERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHA-SGWGMKREEGMLVLT 435
                  *************************.********************************************************.8899*********** PP

         GRAS 362 WkdrpLvsvSaW 373
                  Wk+++ v ++aW
  Araip.LT9MF 436 WKGNSCVYATAW 447
                  ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.63323429IPR005202Transcription factor GRAS
PfamPF035149.8E-8450447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MHVMHSMKAE LKGASSISFQ NHSLFNTAPH SSLTGALKGC LGSLDGACIE KLLLHCASAL  60
ESNDVTLAQQ VMWVLNNVAS PTGDTNQRLT SWFLRALISR ASRICPTALS FKGSSNNIQR  120
RLMTVTELAG YVDLIPWHRF GFCASNNEIF KAILGFQRVH ILDFSITHCM QWPTFIDALA  180
KSPEGPPSLR ITVPSFRPPV PPLVNVSTHE VGLRLANFAK FRDVPFEFNV IGNNLGPLLA  240
PNNSELSNES TSFHVESLLS LLNPSVLNLR DDEALVINCQ NWLRYLSDDR KGNHRCLSLR  300
DAFLSLIKGL NPQIVVLVDE DCDLSSPSLT SRIATCFNHL WIPFDALETF LPKDSCQRTE  360
FESDIGQKIE NIIGYEGHHR IERLESGMQM CQRMKNAGYL SLPFCDETVM EVKGLLDEHA  420
SGWGMKREEG MLVLTWKGNS CVYATAWVPS ETRDPIGFDA TMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B9e-534345027421Protein SHORT-ROOT
5b3h_E9e-534345027421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LT9MF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171942.10.0scarecrow-like protein 32
RefseqXP_025673112.10.0scarecrow-like protein 32
RefseqXP_025673113.10.0scarecrow-like protein 32
TrEMBLA0A444Y6N90.0A0A444Y6N9_ARAHY; Uncharacterized protein
STRINGGLYMA13G38080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-117GRAS family protein