PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LVH57
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 267aa    MW: 30132.4 Da    PI: 6.3989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LVH57genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081439126
                     TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWkt 26
                     +g+WT+eEd +lv +++++G+ +W++
      Araip.LVH57 14 KGPWTPEEDIILVSYIQEHGPSNWRS 39
                     79******************999986 PP
2Myb_DNA-binding48.81.6e-1555100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
      Araip.LVH57  55 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 100
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-241196IPR009057Homeodomain-like
SMARTSM007171.1E-41351IPR001005SANT/Myb domain
PfamPF002493.7E-71448IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-151556IPR009057Homeodomain-like
PROSITE profilePS5129423.5150104IPR017930Myb domain
SMARTSM007174.0E-1554102IPR001005SANT/Myb domain
PfamPF002496.2E-1455100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2457104IPR009057Homeodomain-like
CDDcd001673.93E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRPPCCEKI GIKKGPWTPE EDIILVSYIQ EHGPSNWRSS CRLRWTNYLR PGIKRGNFTD  60
HEEKMIIHLQ ALLGNRWAAI ASYLPQRTDN DIKNYWNTHL KKKLAKNQSG AAEDGGDYQD  120
GNSSRSQPKG QWERRLQTDI HMAKQALSEA LSLSKSSNNN NNVLSESSSS YDASTFNWMK  180
SPNLCAEMTT NSGNSFSSNN SEADHGFDSL LSFKSDDERK PKYLSSSEAQ QQVPLTLLEK  240
WLFDDGAAQC HEDLMNMSLE ESTSGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231210425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LVH57
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176691.11e-167myb-related protein 306
RefseqXP_025631124.11e-167myb-related protein 306
SwissprotP813927e-94MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A445EJA61e-164A0A445EJA6_ARAHY; Uncharacterized protein
STRINGGLYMA04G33720.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.13e-83myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]