PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LW9GQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 134aa    MW: 14621.7 Da    PI: 8.5092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LW9GQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.4e-083312255
                 HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Araip.LW9GQ  3 ALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                 699999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-8135No hitNo description
PROSITE profilePS5088811.928130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-11241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLMMR NGLSLHPMSL PGGLRPMILP  60
HTGVDFDEGN RFQNSINGGA PSSYTADESL VARPPFGFHR PCSISNQSAA MPSLTNLATS  120
DNSSSFQSSI KVIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LW9GQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477275e-49BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207876.17e-90transcription factor APG isoform X1
RefseqXP_025606946.17e-90transcription factor APG-like isoform X1
RefseqXP_025660346.17e-90transcription factor APG-like isoform X1
TrEMBLA0A445CXW34e-87A0A445CXW3_ARAHY; Uncharacterized protein
STRINGGLYMA14G09231.12e-54(Glycine max)
STRINGGLYMA17G35951.12e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-17bHLH family protein