PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LY1EK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 396aa    MW: 45911.4 Da    PI: 9.6289
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LY1EKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.1e-1631117191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++Y+k +GFs+++++++++   +ei+++  vCs+eg+ +++ +    + +t+++  ++C a++ v+  k  + w ++k++l+H+H+++p
  Araip.LY1EK  31 KFYKNYSKLAGFSTKIRNTTQK--GDEIKNQLIVCSREGRWKSKISP---TLKTNPSAGINCPARIYVHILKdVSLWIISKVVLNHSHPCCP 117
                  6***************987766..889*************9998777...999****************988799**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1431117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MNQVDETRCI VDEQFIPKVR MIFKTLEEAE KFYKNYSKLA GFSTKIRNTT QKGDEIKNQL  60
IVCSREGRWK SKISPTLKTN PSAGINCPAR IYVHILKDVS LWIISKVVLN HSHPCCPDRA  120
EMLKRYRELS IVVRGSAYMD FSLPGSPLLG QDEKHTKERE HACIFQQVHH TQQLLKFSHR  180
DTVRNKISNR GPVSARVYPQ EVQRSSRTIQ KKGELHHKIN AFHLGFTTYE VIEQVSNSTF  240
NKFFVTYDAV SRELFELRGI LCHHSLSILN FERVDNMAPK YILENWSKNI KRRYTHIKSS  300
QDEPLLEPRS KRFDDLVFRS HNICEFASEL GSNLEKKISN TTKKKKKPSP SELNPLDSGS  360
MIQSSSSFYN APDMNYPGED YRSFICATEY LDHIQA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LY1EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2377602e-66AY237760.1 Arachis hypogaea clone PM106 microsatellite sequence.
GenBankAY7315982e-66AY731598.1 Arachis hypogaea clone PM449 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445AIQ21e-144A0A445AIQ2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.18e-09FAR1 family protein