PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LZ24L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 286aa    MW: 30464.6 Da    PI: 6.5257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LZ24LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a   ++ +   +W++Ia+ +  g+tl+++k ++ 
      Araip.LZ24L 11 EWSFEQDKAFENALGTYPEDdldRWEKIAADVT-GKTLEEVKQHYE 55
                     7*******************************9.**********95 PP
2Myb_DNA-binding43.95.6e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Araip.LZ24L 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.879762IPR017884SANT domain
SMARTSM007171.2E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-101066IPR009057Homeodomain-like
CDDcd001671.83E-71158No hitNo description
PfamPF002495.0E-61155IPR001005SANT/Myb domain
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466897.9E-17117172IPR009057Homeodomain-like
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-17119169IPR006447Myb domain, plants
CDDcd001671.15E-10122167No hitNo description
PfamPF002497.0E-12122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-11122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAGDEVGSSS EWSFEQDKAF ENALGTYPED DLDRWEKIAA DVTGKTLEEV KQHYELLVDD  60
VNLIESGRVT LPAYNSTSEG STGNASDEGA GKKGGQPWNS NSESNNGSKA SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNN GDVSAPQGPI TGQTNGSAGN STGKSPKQGP PTPTGPPTVG LFGAPTIGQP  240
IGGGPLVSAV GTPVNAHMAY GVRAPVPGAP MNMGAVAYPM PPTSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-18777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LZ24L
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190388.10.0transcription factor SRM1
RefseqXP_016190389.10.0transcription factor SRM1
RefseqXP_020975320.10.0transcription factor SRM1
RefseqXP_020975321.10.0transcription factor SRM1
RefseqXP_025638868.10.0transcription factor SRM1
RefseqXP_025638869.10.0transcription factor SRM1
RefseqXP_029147598.10.0transcription factor SRM1
RefseqXP_029147599.10.0transcription factor SRM1
RefseqXP_029147600.10.0transcription factor SRM1
RefseqXP_029147601.10.0transcription factor SRM1
SwissprotQ9FNN61e-112SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A445DPG00.0A0A445DPG0_ARAHY; Uncharacterized protein
STRINGXP_007153178.11e-162(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-111MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]