PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M0P25
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 339aa    MW: 38405.4 Da    PI: 9.1553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M0P25genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-104490347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT eE +l+ +a +++ ++   +W+++a++++ g+t  ++   ++ +
      Araip.M0P25 44 KWTHEENKLFENALALHDKDtpdRWHRVAEMIP-GKTVLDVMKQYHEL 90
                     8********************************.******99999876 PP
2Myb_DNA-binding44.53.7e-14156200347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Araip.M0P25 156 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 200
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-53691IPR009057Homeodomain-like
PROSITE profilePS512938.8774094IPR017884SANT domain
SMARTSM007171.4E-104193IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-124399IPR009057Homeodomain-like
PfamPF002491.6E-84490IPR001005SANT/Myb domain
CDDcd001673.60E-84491No hitNo description
PROSITE profilePS5129420.486149205IPR017930Myb domain
SuperFamilySSF466898.97E-17150204IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17152204IPR006447Myb domain, plants
SMARTSM007175.3E-13153203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-12153200IPR009057Homeodomain-like
PfamPF002491.3E-12156200IPR001005SANT/Myb domain
CDDcd001671.16E-10156201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKWEVEVLSP SSPYVHHNNT THWFLGDNNI INNNNNNNNR SSTKWTHEEN KLFENALALH  60
DKDTPDRWHR VAEMIPGKTV LDVMKQYHEL LADVSDIENG LVPIPGYSTS TTTTTSPFTL  120
DWVNNNCSGY DGFKGIGAAA KRSSKTPEQE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI  180
SRNFVITRTP TQVASHAQKY FIRQLSGGKD KRRASIHDIT TVNLTDNNNR TLANPSSEDS  240
SKRSTSPQHH HSMVFSNSNP IGKFQWNNNI NNDNDDTKSN SGGGVSTMRF NNDDEAFMSH  300
HYGVNSSYGF KMQGQNMHKS ALNQSSYLAL QTQNIAFQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1541110776RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M0P25
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086840.0KF208684.1 Arachis hypogaea putative MYB-related protein 30 (MYB30) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166135.10.0transcription factor DIVARICATA
RefseqXP_025626611.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445AMY70.0A0A445AMY7_ARAHY; Uncharacterized protein
STRINGXP_007146740.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-79MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]