PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M1PPS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 341aa    MW: 38028.8 Da    PI: 7.2113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M1PPSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.92.8e-1260135178
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                  +fY +YAk++ F +++++++  k ++  +++   C++ g re++ k+     r+++ +  gCka++ vk +k  + w++
  Araip.M1PPS  60 DFYVTYAKKARFATKIKTTTFDKITKAPVNQAIHCNRDGIRESRVKA---PTRKNTISAAGCKARIYVKFDKdVQDWVL 135
                  6*******************************************999...88899999***********9987788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-960135IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSQAMVTSRT SHNVTQLSDV TDVGSEDMEL GDELPDHGCL QEDEIPRVGM RFVQLQMAHD  60
FYVTYAKKAR FATKIKTTTF DKITKAPVNQ AIHCNRDGIR ESRVKAPTRK NTISAAGCKA  120
RIYVKFDKDV QDWVLFKIYM MTDACGSQYT SRRELEDDAA DSRGANCRVS AVDEQGPLVC  180
VKVEEEKLVN DTILCVPYDV HFDRSTQELR CECNLFESSE FVGDDDEIAL LHVALEETRA  240
KLAAHRAKKR SESVSDTQTN IGSQSSNDVG IDDIQGPSKV TTKGKPKSKR LGYALEKSFK  300
NSRRRKQKNS SPVVRPHAFQ DINHGVIAGL NFPDQAGGFI G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M1PPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963385.11e-132protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_025627747.11e-132protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445EMZ51e-151A0A445EMZ5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14126217