PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.M2G3P

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 254aa MW: 29492.2 Da PI: 6.6094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.M2G3P	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6.2e-25	79	168	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ gkw+vtk+++eH+H+l+ Araip.M2G3P 79 LYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLM 168 799*************************************99883333.2448899*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-22	79	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDHQSGQGFD SDDSDLDIQV EISRRLGKVE DGFPKDMELC AGEEEKFIEQ SVADISADGE 60 ALEPFIGMEF NSREEARELY IAYGRRIGFT VRIHHNRRSR VNNQVIGQDF VCSKEGFRAK 120 KYVHRKDRVL PPPPATREGC QAMIRLALRD GGKWVVTKFV KEHTHKLMSP SKVPWRGSGK 180 HLVSEDEKDK RIRELSLELY NERQKYKRRC AAYEEQLNNI LNYLEKHTEH MSEKVADIVR 240 SIREIEEEKA DSDI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.M2G3P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016171103.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171104.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171106.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171107.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171108.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171109.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_016171110.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964200.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964201.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964203.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964204.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964205.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020964206.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_025671943.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A4P1RED7	1e-159	A0A4P1RED7_LUPAN; Uncharacterized protein
STRING	XP_007150429.1	1e-160	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-41	FAR1 family protein