PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M3P4E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 478aa    MW: 54393.4 Da    PI: 8.9938
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M3P4EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.5e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e + +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.M3P4E  51 KFYRNYAKAAGFSTRVQSTNRK--GNEIKNQLITCSREREWKSKISP---TEKTNSTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..8889**********999998766...8999999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198280316IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4287313IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4291318IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDDSTSDCQL NPSEVDYEFE SNEVPEPLSV VDDQLVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVQSTN RKGNEIKNQL ITCSREREWK SKISPTEKTN STAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSICCTIENN EEARMRSTQR SESMHSFFNK  180
FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQKFR  240
EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSRSIFNKF VVTYDSVTAE VKCQCLLFES  300
RGILCRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQLE  360
LTAILHRAYD NVIAEMESLK AKRKGTSSLS HEDANLESVN ELQSPSRIRT RGRPKNRLGS  420
KLDKQITNAT KKKKTKVLSE INLFDAASVV HSNSSQYQGH VMNYQFRVPA AGDNSFAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M3P4E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-26far-red elongated hypocotyls 3