PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.M4D5S

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 496aa MW: 56591.5 Da PI: 7.6232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.M4D5S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.6	3.6e-27	30	115	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++e++HnHel p Araip.M4D5S 30 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYRFEKDHNHELLP 115 9*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-25	30	115	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.695	254	290	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-9	260	288	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	265	292	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MTDTSVFMGT AILEPRNDME FESHEAAYAF YKEYAKSAGF GTAKLSSRRS RASKEFIDAK 60 FSCIRYGNKQ QSDDAINPRP SPKIGCKASM HVKRRQDGKW YVYRFEKDHN HELLPAQAHF 120 FRSHRSSDPL SNDVRMRRRK NSTTVSKLFS AYQNVDCLEN FMKNQHDRGR SLILEPGHAQ 180 HEEEAKANFD AWHETPELRS PSPFEKQMLL VYTHEIYKRF QVEVLGAAAC HLKRENTGVT 240 ETYSVKDFEN NENYMVEWNT SNSDICCSCR SFEYKGYLCR HAIVVLQMSG VFSIPSKYIL 300 QRWTNAALSR HPIGEKLEEV QFKVRRFNDL CRRAIILGEE GSLSQESYYL ALGAISEALK 360 QCANLSNPVE NDTRADASAT HVVCNDEEYQ SIISSNNITP VPKINTSNKV ARTLVACRNL 420 GSTENGEQNK EKVSQLEAAC VKDGFQQVDP TDLTPPHTAI PMQFHSMIPA LFHNHNVSPA 480 QFHAHLHETH HTKDNV

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MTDTSVFMGT AILEPRNDME FESHEAAYAF YKEYAKSAGF GTAKLSSRRS RASKEFIDAK  60
FSCIRYGNKQ QSDDAINPRP SPKIGCKASM HVKRRQDGKW YVYRFEKDHN HELLPAQAHF  120
FRSHRSSDPL SNDVRMRRRK NSTTVSKLFS AYQNVDCLEN FMKNQHDRGR SLILEPGHAQ  180
HEEEAKANFD AWHETPELRS PSPFEKQMLL VYTHEIYKRF QVEVLGAAAC HLKRENTGVT  240
ETYSVKDFEN NENYMVEWNT SNSDICCSCR SFEYKGYLCR HAIVVLQMSG VFSIPSKYIL  300
QRWTNAALSR HPIGEKLEEV QFKVRRFNDL CRRAIILGEE GSLSQESYYL ALGAISEALK  360
QCANLSNPVE NDTRADASAT HVVCNDEEYQ SIISSNNITP VPKINTSNKV ARTLVACRNL  420
GSTENGEQNK EKVSQLEAAC VKDGFQQVDP TDLTPPHTAI PMQFHSMIPA LFHNHNVSPA  480
QFHAHLHETH HTKDNV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.M4D5S

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170322.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_016170323.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_025671767.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_025671768.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	1e-100	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A371G9K4	1e-169	A0A371G9K4_MUCPR; Protein FAR1-RELATED SEQUENCE 4 (Fragment)
STRING	GLYMA13G41660.1	1e-163	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-102	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]