PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M8RK7
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 305aa    MW: 33493.6 Da    PI: 10.1566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M8RK7genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
      Araip.M8RK7  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466897.41E-15267IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
PfamPF002493.1E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12556IPR009057Homeodomain-like
CDDcd116606.04E-18657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLLPA PKIDNDHMAL STAVRHDENV LETKPLAICG LSLPSHNSKQ  120
QLSRSRIQAV EIATDVIIRL GCVYYTLWVR PFPGPCINEN YQSPTNLGKL LRTRLKHMVD  180
IGKIIKVQQR YKISPSSTGS EKRRYSSSTL PLEGRPRDSP EAEKSHDVNI LSKSQVDADI  240
SKAKSMTAQE AAVAAAKAVA EAEAAIAEAE LAAREAEAAE AEAEAAHVFA KAAMKALKCK  300
TSLIW
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M8RK7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025627394.11e-147telomere repeat-binding factor 2
TrEMBLA0A445AR861e-145A0A445AR86_ARAHY; Uncharacterized protein
STRINGGLYMA05G22500.31e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-47telomere repeat binding factor 1