PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M95YN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 814aa    MW: 90847.6 Da    PI: 6.6458
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M95YNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.33.9e-20155286199
                  EEEE-..-HHHHTT-EE--HHH.HTT....................................---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....................................ggkkeesktltledesgrsWevkliyrkksgryvlt 62 
                  f+k lt sd++++g +++p++ ae++                                    + +++ s++l+ +d++g +W++++iyr++++r++lt
  Araip.M95YN 155 FCKSLTASDTSTHGGFSVPRRAAEDCfpplvsnlnsslllttlfvlklyvtletryinnsdyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLT 251
                  89******************************9999999999999999999999999999853.3345679*************************** PP

                  TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +GW+ Fv +++L +gD v+F   + +++el+++++r+
  Araip.M95YN 252 TGWSMFVGQKKLVSGDAVLFL--RGENGELRLGIRRA 286
                  *********************..4499999****996 PP
2Auxin_resp116.42.4e-38312393282
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                  ++a+stks+F+v+Y+Pras++ Fvv+++k++k+++++v++G+Rfkm fe+++s+err+  Gtv+g+s++dp+rWp+SkWr+L
  Araip.M95YN 312 SDAISTKSMFHVFYSPRASHAPFVVPYQKYVKSINNPVTIGTRFKMTFEMDESPERRCgGGTVIGMSEVDPYRWPKSKWRCL 393
                  6799******************************************************99*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-14148191IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-35149289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-17153285No hitNo description
SMARTSM010196.5E-19155287IPR003340B3 DNA binding domain
PfamPF023629.9E-19155286IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674189287IPR003340B3 DNA binding domain
SuperFamilySSF1019361.11E-22215297IPR015300DNA-binding pseudobarrel domain
PfamPF065074.2E-33312393IPR010525Auxin response factor
PROSITE profilePS5174522.063685767IPR000270PB1 domain
SuperFamilySSF542772.99E-10688764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MDIDLNHAVV VSSEDDDESN VECDKAASSP SPSGSAMSSY LELWHACAGP LTSLPKKGNV  60
IVYFPQGHLE QASSFSHFAP IDVPNYDLQP QILCRVVNVQ LLANKENDEV YTQITLLPQS  120
DELEDKNLEG KEVEEIGGDE EGNGVPPLKP TTHMFCKSLT ASDTSTHGGF SVPRRAAEDC  180
FPPLVSNLNS SLLLTTLFVL KLYVTLETRY INNSDYKQQR PSQELVAKDL HGVEWKFRHI  240
YRGQPRRHLL TTGWSMFVGQ KKLVSGDAVL FLRGENGELR LGIRRAIRPI NGLPGTVIGN  300
QNCYPNFLSS VSDAISTKSM FHVFYSPRAS HAPFVVPYQK YVKSINNPVT IGTRFKMTFE  360
MDESPERRCG GGTVIGMSEV DPYRWPKSKW RCLMVRWDED IDTNHQDRVS PWEIDPFASL  420
PPLSLQSSPR LKKLRTDGQA AAHSHLITGS SGLVDFEESV RSPKVLQGQE NAGFLSLYYG  480
CDTLTNRPRF EMSPLPHVAS TTGVRRGNTA ELMSVHPFSY AGFTETTRFP RVLQGQEIGP  540
LKSLRGKVDL SLGSWGKSNN SIGCTTFNFH QATKPQVLES YFPYGDIHNK TAQTNMFYSK  600
PTNFHRENVS FNTHSNQGVI KRSEVGRTDV PNEHKKTMPG ETCAPDMKIP DDSKNVKAKV  660
NGCKLFGFPL SGETTPQNLQ NTAKRSCTKV HKQGSLVGRA IDLSRLSSYA DLLSELERLF  720
GMEGLLRDPD KGWRILYTDN ENDIMVVGDD PWHEFCNVVC KIHIYSQEEV EKMTIGIIND  780
DTNSSLEEAP MIMEPSKSSS VGQPDYYSPT VLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1133441912357Auxin response factor 1
4ldw_A1e-1133441912357Auxin response factor 1
4ldw_B1e-1133441912357Auxin response factor 1
4ldy_A1e-1123441912357Auxin response factor 1
4ldy_B1e-1123441912357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M95YN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187394.10.0auxin response factor 4 isoform X2
RefseqXP_025641826.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A445AA540.0A0A445AA54_ARAHY; Auxin response factor
STRINGGLYMA12G07560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]