PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.M9H9S

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 394aa MW: 44589.5 Da PI: 10.048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.M9H9S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.4e-17	89	175	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk vGFs+r++ +++ ++i+++ +Cs+e k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.M9H9S 89 KFYRNYAKAVGFSTRVRGINRK--GNKIKNQLITCSRERKWKSKISP---TEKTNPTADLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 175 6**************98887..777999******9998777...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-14	89	175	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.617	186	217	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-4	191	214	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	192	219	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MCGFTGGAAE VTAISTNLLV LLLAKLPLVS SIVLFPSFLT RFFFVIYLNP SEVDYEFESN 60 EVPEPLSVVD DQFVPKVGMT FTTLEDAGKF YRNYAKAVGF STRVRGINRK GNKIKNQLIT 120 CSRERKWKSK ISPTEKTNPT ADLNCPARIY IHTLKDVGAW IISKVVLDHS HPCCPSKAEM 180 LKQHRELIAV EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRHTH 240 IKSSHDEPLL EPRSKRLDQL VFRSQNICEF ASKLEELTAI LHRVYDNVMA EMESLKAKRK 300 GTSSLSHEDA NLESVNELQS LPRIRTRGRP KNRLGSKLDK QIANATKKKK TKVLSEINLF 360 DAASVVHSNS SQYQGHVMNY QFRVPGVGDN SLGV

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MCGFTGGAAE VTAISTNLLV LLLAKLPLVS SIVLFPSFLT RFFFVIYLNP SEVDYEFESN  60
EVPEPLSVVD DQFVPKVGMT FTTLEDAGKF YRNYAKAVGF STRVRGINRK GNKIKNQLIT  120
CSRERKWKSK ISPTEKTNPT ADLNCPARIY IHTLKDVGAW IISKVVLDHS HPCCPSKAEM  180
LKQHRELIAV EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRHTH  240
IKSSHDEPLL EPRSKRLDQL VFRSQNICEF ASKLEELTAI LHRVYDNVMA EMESLKAKRK  300
GTSSLSHEDA NLESVNELQS LPRIRTRGRP KNRLGSKLDK QIANATKKKK TKVLSEINLF  360
DAASVVHSNS SQYQGHVMNY QFRVPGVGDN SLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.M9H9S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	1e-131	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444Y6C3	0.0	A0A444Y6C3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-12	far-red elongated hypocotyls 3