PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M9VNK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24928.2 Da    PI: 8.4547
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M9VNKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-14951143
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 k i n+s+r+ t+ kR+ g+ KK  E+S+LC+++++ ii+ ++
  Araip.M9VNK  9 KYITNDSKRKATLRKRKSGLTKKVDEISTLCGVDACAIIYTPD 51
                 5799************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.974149IPR002100Transcription factor, MADS-box
CDDcd002661.14E-30285No hitNo description
SuperFamilySSF554552.62E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MARKKVELKY ITNDSKRKAT LRKRKSGLTK KVDEISTLCG VDACAIIYTP DEPRPEVWPS  60
PSEVNRVVSR FKEMPELEQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS  120
LAGCQSLDNA TMIDLNDLAW IIDQNIKEID KQISKLQGQE GTSSNNNGVA TINGEQAQVD  180
NIINGGVFPF VDGANNFQND PFVDGANIFQ NDYRPAPFDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVELKYITNDSKRKATLRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M9VNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203631.21e-162agamous-like MADS-box protein AGL80
SwissprotQ9FJK37e-50AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A445AMG21e-149A0A445AMG2_ARAHY; Uncharacterized protein
STRINGXP_004500454.16e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-45AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]