PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MAR0Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 442aa    MW: 47505.4 Da    PI: 6.1901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MAR0QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.8e-34244301260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+ +Cpvkkkver+  d++++ei+Y+g+Hnhek
  Araip.MAR0Q 244 DDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHEK 301
                  8****************************************.***************85 PP
2WRKY352.8e-11421442122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  ldDgy+WrKYGqK+vkg+++pr
  Araip.MAR0Q 421 LDDGYRWRKYGQKVVKGNPHPR 442
                  59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29232303IPR003657WRKY domain
SuperFamilySSF1182901.7E-26241302IPR003657WRKY domain
SMARTSM007741.3E-37243301IPR003657WRKY domain
PfamPF031063.9E-26244300IPR003657WRKY domain
PROSITE profilePS5081123.571244302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-13406442IPR003657WRKY domain
SuperFamilySSF1182901.7E-9413442IPR003657WRKY domain
PROSITE profilePS5081116.352416442IPR003657WRKY domain
PfamPF031063.9E-7422442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSTTDANSAA APPPQSSRPT ITLPPRPSAE AFFSGAGAGI SPGPMTLVSS FFSDGGGSDS  60
DYRSFSQLLA GAMASPLAFG GASRPPFPPP ENPGENSGEE GAQKSLGFKQ SRPMNLVVAR  120
SPMFTIPPGL SPSGFLNSPG FFSPQSPFGM SHQQALAQVT AQAVFAQSQM HMQADYQAPA  180
VTAPTAPANL SVEQPSFTQN EASQQQVVPS VSEPSNAQVE TSDISNTDNK KYQPSSMVID  240
KPADDGYNWR KYGQKQVKGS EFPRSYYKCT HLNCPVKKKV ERAPDGHITE IIYKGQHNHE  300
KPQANRRVKE NNDSNGNSNV PPKSELTSQG WVGNATKVAE SMPDCSVPES DQTSNQGASR  360
LPGSSESEEV GNVDNREEGD DGEPNPKRRN TEVAVSEVPL SQKTVTEPKI IVQTRSEVDL  420
LDDGYRWRKY GQKVVKGNPH PR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-162443021877Probable WRKY transcription factor 4
2lex_A2e-162443021877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MAR0Q
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194312.10.0probable WRKY transcription factor 4
RefseqXP_025649963.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-122WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A444ZPU50.0A0A444ZPU5_ARAHY; Uncharacterized protein
STRINGXP_007139560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-92WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]