PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MGF6M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 217aa    MW: 23735.4 Da    PI: 4.46
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MGF6MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-31790183
       DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83
                 +C aCk+lrrkC ++Cv+apyf  +q + +fa+vhk++Gasnv++ll++lp  +r+da+ +++yeA ar++dP+yG+v+ +++ 
  Araip.MGF6M  7 SCGACKFLRRKCGSGCVFAPYFSYDQaATHFAAVHKIYGASNVSRLLSHLPILNRSDAAITITYEALARMQDPIYGCVASLQEE 90
                 6***********************99789*************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6376108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-29789IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCGS GCVFAPYFSY DQAATHFAAV HKIYGASNVS RLLSHLPILN  60
RSDAAITITY EALARMQDPI YGCVASLQEE IDIIGNLMAN STTGATNCGI NNVEAPITKM  120
EYSNCGIQYP MQDDDDAVTT TNQCYQNEMA NNILSQEGSM TPRQGYGSHM DIELPNNNGN  180
GFEGPFVFDD HPNFNNNNNP LEKFLSGIDQ EGFMNHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-293927105LOB family transfactor Ramosa2.1
5ly0_B8e-293927105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MGF6M
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025664457.11e-153LOB domain-containing protein 33-like
SwissprotQ9LHS88e-45LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A444YCV41e-152A0A444YCV4_ARAHY; Uncharacterized protein
STRINGGLYMA02G41710.23e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-47LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]