PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MJT6H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 246aa    MW: 27544.1 Da    PI: 8.4595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MJT6HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.3e-151866148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEde+l+ + +++G+  +W + + + g++R++k+c++rw++yl
      Araip.MJT6H 18 RGPWSHEEDEILKSYLNKHGSAgNWIALPLKAGLKRCGKSCRLRWLNYL 66
                     89******************999************************97 PP
2Myb_DNA-binding44.14.8e-1473115246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T +Ed+l+  + +  G++ W++Ia+ ++ gRt++++k++w++
      Araip.MJT6H  73 GAFTDDEDKLISTLYATIGSR-WSLIAAQLP-GRTDNDVKNHWNT 115
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2251366IPR017930Myb domain
SuperFamilySSF466894.4E-2615113IPR009057Homeodomain-like
SMARTSM007171.5E-101768IPR001005SANT/Myb domain
PfamPF002491.3E-131866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-221972IPR009057Homeodomain-like
CDDcd001672.33E-82066No hitNo description
PROSITE profilePS5129421.17667121IPR017930Myb domain
SMARTSM007172.0E-1271119IPR001005SANT/Myb domain
PfamPF002498.6E-1373115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2273120IPR009057Homeodomain-like
CDDcd001672.43E-974117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
ERVAMGRSPC CDKANVKRGP WSHEEDEILK SYLNKHGSAG NWIALPLKAG LKRCGKSCRL  60
RWLNYLRPHI KHGAFTDDED KLISTLYATI GSRWSLIAAQ LPGRTDNDVK NHWNTKLRKK  120
FFAGGINTAN ATTVLNTASS KFPTFTPQIE AFDHNNNTPT TCFESAVLGL YQTPFPVPSK  180
MLPLESDISA ANPLVIKEKD HVGHQWLGYY AEEDDAFLLD FVQNGFAYSQ YKNTQLDPSS  240
SSSSYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251812127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MJT6H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193459.10.0transcription factor RAX1-like
RefseqXP_025641148.10.0transcription factor RAX1
TrEMBLA0A445A0920.0A0A445A092_ARAHY; Uncharacterized protein
STRINGGLYMA05G36120.25e-87(Glycine max)
STRINGXP_007160258.11e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-66myb domain protein 36