PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.MML9E

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 228aa MW: 25044.2 Da PI: 8.2102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.MML9E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.4	7.5e-41	48	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r++dPvyG++g i++lqqq++ l ael++++ Araip.MML9E 48 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLKDPVYGCMGAISSLQQQVQYLIAELNAVR 145 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Araip.MML9E 146 DE 147 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.388	47	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	48	145	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSRERERSDD EVGKKIKREG DGQKGRRQHM LGSQQQAASG GTLNTITPCA ACKLLRRRCA 60 QECPFSPYFS PHEPQKFASV HKVFGASNVS KLLMEVPENQ RADAANSLVY EANVRLKDPV 120 YGCMGAISSL QQQVQYLIAE LNAVRDEIIK YKLREVNNTI IPSSSHHVML PSSSSSEVVS 180 IAVPPPPPPP NHDILPPNSS TSSSMVYPQQ TDPSNYGTIS SDNISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	47	164	10	125	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	47	164	10	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.MML9E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	8e-46	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016165559.1	1e-169	LOB domain-containing protein 15
Refseq	XP_025669055.1	1e-169	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A444YDS0	1e-165	A0A444YDS0_ARAHY; Uncharacterized protein
STRING	XP_007137607.1	3e-99	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-78	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]