PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MR2TJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 186aa    MW: 21197.4 Da    PI: 4.7412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MR2TJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.44.7e-18101186181
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                  ++YneY++  GFsvr+sk  ++     +g+i+++ fvCs+eg+r++++ + +++++ +r+ tr+gC+a++k + ++ +g+w v+++
  Araip.MR2TJ 101 NYYNEYGRIKGFSVRRSKVGRRikqGADGKIIWQIFVCSREGERDRKHMQrEDRKKDPRPITRCGCEARIKAHVDDaSGRWFVEQF 186
                  69**************9988776557899***************99998856677789*****************99******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-16101186IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDQTGQRDSQ DVWDYSCVFV VMVDNADVLF AHCPNGFVEP SYDFSSNFDR VHASQDADDG  60
MSGETVPVEE AKVMDSSAAD ADIDAEDVLT TEFTSLQAAY NYYNEYGRIK GFSVRRSKVG  120
RRIKQGADGK IIWQIFVCSR EGERDRKHMQ REDRKKDPRP ITRCGCEARI KAHVDDASGR  180
WFVEQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MR2TJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192260.16e-88protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025639519.16e-88protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XQY91e-109A0A444XQY9_ARAHY; Uncharacterized protein
STRINGTraes_5DL_FC7D15A05.12e-18(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-13FAR1-related sequence 5